PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002608.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family E2F/DP
Protein Properties Length: 517aa    MW: 58078.5 Da    PI: 7.85
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002608.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.61e-232085171
      E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                 rk+ksL+ll+++fl+l+++ + +++ l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  CCG002608.1 20 RKQKSLGLLCTNFLTLYNRDDIDVIGLDDAASKL---GV--ERRRIYDIVNVLESVGVLARKAKNKYSWKG 85
                 79****************9999************...**..****************************98 PP

2E2F_TDP73.32.5e-23156236171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                  r+eksL+lltq+f+kl+ +s+++ ++l+e ak L+ +      +++k+RR+YDi+NVL++l+liek     ++k+++rw g
  CCG002608.1 156 RREKSLGLLTQNFVKLFVCSNANLISLDESAKLLLGDghnlsIMRTKVRRLYDIANVLSSLKLIEKthtadTRKPAFRWLG 236
                  689***************************************9***************************99*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-251686IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.33E-151983IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-282085IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.8E-202185IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-22152237IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-28156236IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.03E-11158237IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.4E-18158236IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MALSYTDIID PPSRHHAYSR KQKSLGLLCT NFLTLYNRDD IDVIGLDDAA SKLGVERRRI  60
YDIVNVLESV GVLARKAKNK YSWKGFASVP KALQDLKEEG LRDNVNTIDR QSNNSAKVAN  120
DDEDEDDDSD SNPNTGSQNE NSGIIKSTAV SRSDHRREKS LGLLTQNFVK LFVCSNANLI  180
SLDESAKLLL GDGHNLSIMR TKVRRLYDIA NVLSSLKLIE KTHTADTRKP AFRWLGFRGK  240
SENGSGDPLA PFESKKRTFG ADITNTCFKR NKMDSSVDGD KSQNLKMQQI KDENTVTVAE  300
RGYFGQDLQQ KSGSFQFGPF APVSVAKAGN PEDKLTRVYD WEGLSSTFRP QYHNQEPECG  360
NMKSSYAEFC SSERSLFPLH GSMEIMYSVG FSKFFFLYFL GQKKWLQVGC TFPVHHLSMA  420
TQCSLSDASK QINLNIWSFL RRLTSYEVAF DCATYHFLHG TAAVAQYFPD FYLSRTCSAS  480
PGCFNTLMMP EGIKDDDTDK VCKCIIEWKL LIPSNTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-37192283228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028635.10.0PREDICTED: E2F transcription factor-like E2FE
SwissprotQ8LSZ41e-112E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLB9IEL20.0B9IEL2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s08160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-114DP-E2F-like 1